Identification of mycoparasitism-related genes in Trichoderma atroviride.
Identifieur interne : 001713 ( Main/Exploration ); précédent : 001712; suivant : 001714Identification of mycoparasitism-related genes in Trichoderma atroviride.
Auteurs : Barbara Reithner [Autriche] ; Enrique Ibarra-Laclette ; Robert L. Mach ; Alfredo Herrera-EstrellaSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2011.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Botrytis (MeSH), Facteurs de virulence (biosynthèse), Interactions microbiennes (MeSH), Phytophthora (microbiologie), Rhizoctonia (MeSH), Régulation de l'expression des gènes fongiques (MeSH), Trichoderma (croissance et développement), Trichoderma (génétique).
- MESH :
- biosynthèse : Facteurs de virulence.
- croissance et développement : Trichoderma.
- génétique : Trichoderma.
- microbiologie : Phytophthora.
- Analyse de profil d'expression de gènes, Botrytis, Interactions microbiennes, Rhizoctonia, Régulation de l'expression des gènes fongiques.
English descriptors
- KwdEn :
- MESH :
- chemical , biosynthesis : Virulence Factors.
- genetics : Trichoderma.
- growth & development : Trichoderma.
- microbiology : Phytophthora.
- Botrytis, Gene Expression Profiling, Gene Expression Regulation, Fungal, Microbial Interactions, Rhizoctonia.
Abstract
A high-throughput sequencing approach was utilized to carry out a comparative transcriptome analysis of Trichoderma atroviride IMI206040 during mycoparasitic interactions with the plant-pathogenic fungus Rhizoctonia solani. In this study, transcript fragments of 7,797 Trichoderma genes were sequenced, 175 of which were host responsive. According to the functional annotation of these genes by KOG (eukaryotic orthologous groups), the most abundant group during direct contact was "metabolism." Quantitative reverse transcription (RT)-PCR confirmed the differential transcription of 13 genes (including swo1, encoding an expansin-like protein; axe1, coding for an acetyl xylan esterase; and homologs of genes encoding the aspartyl protease papA and a trypsin-like protease, pra1) in the presence of R. solani. An additional relative gene expression analysis of these genes, conducted at different stages of mycoparasitism against Botrytis cinerea and Phytophthora capsici, revealed a synergistic transcription of various genes involved in cell wall degradation. The similarities in expression patterns and the occurrence of regulatory binding sites in the corresponding promoter regions suggest a possible analog regulation of these genes during the mycoparasitism of T. atroviride. Furthermore, a chitin- and distance-dependent induction of pra1 was demonstrated.
DOI: 10.1128/AEM.00129-11
PubMed: 21531825
PubMed Central: PMC3127718
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Mach</name></author><author><name sortKey="Herrera Estrella, Alfredo" sort="Herrera Estrella, Alfredo" uniqKey="Herrera Estrella A" first="Alfredo" last="Herrera-Estrella">Alfredo Herrera-Estrella</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="RBID">pubmed:21531825</idno><idno type="pmid">21531825</idno><idno type="doi">10.1128/AEM.00129-11</idno><idno type="pmc">PMC3127718</idno><idno type="wicri:Area/Main/Corpus">001712</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001712</idno><idno type="wicri:Area/Main/Curation">001712</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001712</idno><idno type="wicri:Area/Main/Exploration">001712</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Identification of mycoparasitism-related genes in Trichoderma atroviride.</title><author><name sortKey="Reithner, Barbara" sort="Reithner, Barbara" uniqKey="Reithner B" first="Barbara" last="Reithner">Barbara Reithner</name><affiliation wicri:level="1"><nlm:affiliation>Research Area Gene Technology, Institute of Chemical Engineering, Vienna University of Technology, Gumpendorferstraße 1a/166, A-1060 Vienna, Austria. barbara.reithner@tuwien.ac.at</nlm:affiliation><country xml:lang="fr">Autriche</country><wicri:regionArea>Research Area Gene Technology, Institute of Chemical Engineering, Vienna University of Technology, Gumpendorferstraße 1a/166, A-1060 Vienna</wicri:regionArea><wicri:noRegion>A-1060 Vienna</wicri:noRegion></affiliation></author><author><name sortKey="Ibarra Laclette, Enrique" sort="Ibarra Laclette, Enrique" uniqKey="Ibarra Laclette E" first="Enrique" last="Ibarra-Laclette">Enrique Ibarra-Laclette</name></author><author><name sortKey="Mach, Robert L" sort="Mach, Robert L" uniqKey="Mach R" first="Robert L" last="Mach">Robert L. Mach</name></author><author><name sortKey="Herrera Estrella, Alfredo" sort="Herrera Estrella, Alfredo" uniqKey="Herrera Estrella A" first="Alfredo" last="Herrera-Estrella">Alfredo Herrera-Estrella</name></author></analytic><series><title level="j">Applied and environmental microbiology</title><idno type="eISSN">1098-5336</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Botrytis (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Fungal (MeSH)</term><term>Microbial Interactions (MeSH)</term><term>Phytophthora (microbiology)</term><term>Rhizoctonia (MeSH)</term><term>Trichoderma (genetics)</term><term>Trichoderma (growth & development)</term><term>Virulence Factors (biosynthesis)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Botrytis (MeSH)</term><term>Facteurs de virulence (biosynthèse)</term><term>Interactions microbiennes (MeSH)</term><term>Phytophthora (microbiologie)</term><term>Rhizoctonia (MeSH)</term><term>Régulation de l'expression des gènes fongiques (MeSH)</term><term>Trichoderma (croissance et développement)</term><term>Trichoderma (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Virulence Factors</term></keywords><keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Facteurs de virulence</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Trichoderma</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trichoderma</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Trichoderma</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Trichoderma</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Botrytis</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Fungal</term><term>Microbial Interactions</term><term>Rhizoctonia</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Botrytis</term><term>Interactions microbiennes</term><term>Rhizoctonia</term><term>Régulation de l'expression des gènes fongiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A high-throughput sequencing approach was utilized to carry out a comparative transcriptome analysis of Trichoderma atroviride IMI206040 during mycoparasitic interactions with the plant-pathogenic fungus Rhizoctonia solani. In this study, transcript fragments of 7,797 Trichoderma genes were sequenced, 175 of which were host responsive. According to the functional annotation of these genes by KOG (eukaryotic orthologous groups), the most abundant group during direct contact was "metabolism." Quantitative reverse transcription (RT)-PCR confirmed the differential transcription of 13 genes (including swo1, encoding an expansin-like protein; axe1, coding for an acetyl xylan esterase; and homologs of genes encoding the aspartyl protease papA and a trypsin-like protease, pra1) in the presence of R. solani. An additional relative gene expression analysis of these genes, conducted at different stages of mycoparasitism against Botrytis cinerea and Phytophthora capsici, revealed a synergistic transcription of various genes involved in cell wall degradation. The similarities in expression patterns and the occurrence of regulatory binding sites in the corresponding promoter regions suggest a possible analog regulation of these genes during the mycoparasitism of T. atroviride. Furthermore, a chitin- and distance-dependent induction of pra1 was demonstrated.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21531825</PMID><DateCompleted><Year>2011</Year><Month>10</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>77</Volume><Issue>13</Issue><PubDate><Year>2011</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Identification of mycoparasitism-related genes in Trichoderma atroviride.</ArticleTitle><Pagination><MedlinePgn>4361-70</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.00129-11</ELocationID><Abstract><AbstractText>A high-throughput sequencing approach was utilized to carry out a comparative transcriptome analysis of Trichoderma atroviride IMI206040 during mycoparasitic interactions with the plant-pathogenic fungus Rhizoctonia solani. In this study, transcript fragments of 7,797 Trichoderma genes were sequenced, 175 of which were host responsive. According to the functional annotation of these genes by KOG (eukaryotic orthologous groups), the most abundant group during direct contact was "metabolism." Quantitative reverse transcription (RT)-PCR confirmed the differential transcription of 13 genes (including swo1, encoding an expansin-like protein; axe1, coding for an acetyl xylan esterase; and homologs of genes encoding the aspartyl protease papA and a trypsin-like protease, pra1) in the presence of R. solani. An additional relative gene expression analysis of these genes, conducted at different stages of mycoparasitism against Botrytis cinerea and Phytophthora capsici, revealed a synergistic transcription of various genes involved in cell wall degradation. The similarities in expression patterns and the occurrence of regulatory binding sites in the corresponding promoter regions suggest a possible analog regulation of these genes during the mycoparasitism of T. atroviride. 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Mach</name></noCountry><country name="Autriche"><noRegion><name sortKey="Reithner, Barbara" sort="Reithner, Barbara" uniqKey="Reithner B" first="Barbara" last="Reithner">Barbara Reithner</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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